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Plot selected GO terms

plot_go_terms_upset.Rd

This function plots a set of GO terms of interest. be run after get_enriched_go and estimate_go_overrep. To avoid plotting too many terms, you may wish to use remove_redundant_go first too. A warning is shown if you try and plot more than 100 GO terms.

Usage

plot_go_terms_upset(
  goi,
  foi,
  gene2cat,
  term_col = "TERM",
  gene_col = "UNIPROTKB"
)

Arguments

goi

character GO terms of interest

foi

character features (genes/proteins etc) of interest

gene2cat

data.frame with 2 columns containing the mapping between genes (usually UniProt accessions, Ensembl gene IDs or similar) and GO terms.

term_col

character column name for GO term description.

gene_col

character column name for genes (or protein etc).

Value

Returns a ggplot object.