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Extract the number of samples each feature was detected in for each experiment in a Qfeatures object

get_samples_present.Rd

When exploring the proteome coverage, it is instructive to consider how many samples a protein was present in for each level of filtering. This function takes a Qfeatures object and tallies how many samples a variable in the rowData was present in. When the row variables are the protein names, the tally is thus the number of samples the protein was present in.

Usage

get_samples_present(obj, rowVars, rename_cols = NULL)

Arguments

obj

QFeatures object

rowVars

character vector row variables to group by, e.g 'Master.Protein.Accessions'

rename_cols

named character vector optional named list to rename the experiments. List values should be current experiment names and list names should be updated experiment names

Value

data.frame object.