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Identify how many features (PSMs/Peptides) are quantified for each protein

get_n_feature_per_prot.Rd

For summarisation of PSM or peptide to protein, we need a minimum number of finite values per protein per sample. This function simply tallies how many we have.

Usage

get_n_feature_per_prot(obj, master_protein_col = "Master.Protein.Accessions")

Arguments

obj

SummarizedExperiment with PSM or peptide-level quantification

master_protein_col

character Column name for master protein

Value

data.frame detailing how many features are present for each protein in each sample